Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10800930	0.84[EUR][1000 genomes]
rs10800931	0.81[EUR][1000 genomes]
rs10920639	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10920640	0.84[EUR][1000 genomes]
rs10920645	0.82[EUR][1000 genomes]
rs10920648	0.82[EUR][1000 genomes]
rs10920649	0.81[EUR][1000 genomes]
rs12127756	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12129572	0.80[EUR][1000 genomes]
rs12131687	0.82[EUR][1000 genomes]
rs12565161	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16851575	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1891181	0.84[EUR][1000 genomes]
rs2365601	0.82[EUR][1000 genomes]
rs3818943	0.84[EUR][1000 genomes]
rs4634967	0.84[EUR][1000 genomes]
rs4638182	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4971206	0.82[EUR][1000 genomes]
rs4971219	0.82[ASN][1000 genomes]
rs4971224	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7549494	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762217	chr1:203378754-203599192	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203377000-203381400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:203378800-203380800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr1:203379000-203392000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:203379000-203394000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:203380400-203380800	ZNF genes & repeats	Lung	lung
6	chr1:203380400-203381200	ZNF genes & repeats	Fetal Intestine Small	intestine

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