Variant report

Variant	rs10920640
Chromosome Location	chr1:203379947-203379948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:203363383..203365308-chr1:203378338..203380043,2	MCF-7	breast:
2	chr1:203377735..203380364-chr1:203401115..203403811,2	K562	blood:
3	chr1:203372032..203373841-chr1:203378581..203380625,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10753942	0.84[EUR][1000 genomes]
rs10753943	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10800929	0.85[ASN][1000 genomes]
rs10800930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800931	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920639	0.81[EUR][1000 genomes]
rs10920643	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10920644	0.96[ASN][1000 genomes]
rs10920645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920647	0.96[ASN][1000 genomes]
rs10920648	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10920649	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11584151	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12044008	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12127756	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12129572	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12131687	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565161	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851575	0.82[EUR][1000 genomes]
rs1891181	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365601	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3818943	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634967	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4638182	0.82[EUR][1000 genomes]
rs4971206	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7542909	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7542979	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7549494	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762217	chr1:203378754-203599192	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203376400-203380000	Enhancers	Rectal Smooth Muscle	rectum
2	chr1:203377000-203381400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:203377600-203380200	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:203377600-203380200	Enhancers	Fetal Thymus	thymus
5	chr1:203377600-203380600	Enhancers	Placenta	Placenta
6	chr1:203377600-203380600	Enhancers	Thymus	Thymus
7	chr1:203378200-203380000	Enhancers	Primary B cells from cord blood	blood
8	chr1:203378200-203380200	Weak transcription	Spleen	Spleen
9	chr1:203378200-203380400	Weak transcription	Lung	lung
10	chr1:203378400-203380000	Enhancers	Stomach Smooth Muscle	stomach
11	chr1:203378800-203380000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:203378800-203380000	Enhancers	Colon Smooth Muscle	Colon
13	chr1:203378800-203380200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:203378800-203380200	Weak transcription	Stomach Mucosa	stomach
15	chr1:203378800-203380800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr1:203379000-203392000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:203379000-203394000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:203379200-203380000	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:203379400-203380400	Weak transcription	Fetal Intestine Small	intestine
20	chr1:203379600-203380400	Weak transcription	Fetal Stomach	stomach
21	chr1:203379800-203380000	Enhancers	Aorta	Aorta
22	chr1:203379800-203380000	Enhancers	Brain Substantia Nigra	brain
23	chr1:203379800-203380200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:203379800-203380200	Enhancers	Placenta Amnion	Placenta Amnion

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