Variant report

Variant	rs10920639
Chromosome Location	chr1:203378005-203378006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:203377735..203380364-chr1:203401115..203403811,2	K562	blood:
2	chr1:203377995..203379549-chr1:203524610..203526768,2	MCF-7	breast:

rs_ID	r²[population]
rs10753942	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10800930	0.81[EUR][1000 genomes]
rs10920640	0.81[EUR][1000 genomes]
rs16851575	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1891181	0.81[EUR][1000 genomes]
rs3818943	0.81[EUR][1000 genomes]
rs4634967	0.81[EUR][1000 genomes]
rs4638182	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4971224	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203373600-203379800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:203374800-203378600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:203374800-203379400	Enhancers	Fetal Intestine Small	intestine
4	chr1:203375000-203378400	Enhancers	NHDF-Ad	bronchial
5	chr1:203375000-203379600	Enhancers	Fetal Intestine Large	intestine
6	chr1:203375200-203378400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:203375200-203379000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:203375400-203378200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:203375400-203378600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:203375400-203378800	Enhancers	Brain Hippocampus Middle	brain
11	chr1:203375800-203379600	Enhancers	Brain Angular Gyrus	brain
12	chr1:203376400-203380000	Enhancers	Rectal Smooth Muscle	rectum
13	chr1:203376600-203378600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:203376600-203379800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:203377000-203378400	Enhancers	NHLF	lung
16	chr1:203377000-203378800	Enhancers	Stomach Mucosa	stomach
17	chr1:203377000-203378800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:203377000-203381400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:203377200-203378200	Enhancers	Osteobl	bone
20	chr1:203377200-203378600	Enhancers	Brain Cingulate Gyrus	brain
21	chr1:203377200-203378600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr1:203377200-203379000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr1:203377200-203379400	Enhancers	Adipose Nuclei	Adipose
24	chr1:203377400-203378200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:203377400-203378200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:203377400-203378200	Enhancers	NHEK	skin
27	chr1:203377400-203378400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr1:203377400-203378600	Enhancers	Brain Anterior Caudate	brain
29	chr1:203377400-203378600	Enhancers	Brain Substantia Nigra	brain
30	chr1:203377400-203378800	Enhancers	Fetal Muscle Leg	muscle
31	chr1:203377600-203378200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:203377600-203378200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:203377600-203378200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:203377600-203378200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:203377600-203378200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:203377600-203378200	Enhancers	Fetal Lung	lung
37	chr1:203377600-203378200	Enhancers	Fetal Muscle Trunk	muscle
38	chr1:203377600-203378200	Enhancers	Lung	lung
39	chr1:203377600-203378200	Enhancers	Spleen	Spleen
40	chr1:203377600-203378200	Enhancers	HMEC	breast
41	chr1:203377600-203378200	Enhancers	HSMMtube	muscle
42	chr1:203377600-203378200	Enhancers	NH-A	brain
43	chr1:203377600-203378400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:203377600-203378400	Enhancers	Colonic Mucosa	Colon
45	chr1:203377600-203378400	Enhancers	Left Ventricle	heart
46	chr1:203377600-203378600	Enhancers	Esophagus	oesophagus
47	chr1:203377600-203378800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:203377600-203378800	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr1:203377600-203379000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr1:203377600-203379200	Enhancers	Ovary	ovary

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