The 2.0 version of rSNPBase

Variant report

Variant rs10800929
Chromosome Location chr1:203377023-203377024
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:203371400-203377600 Weak transcription Left Ventricle heart
2 chr1:203372200-203377400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:203372200-203377600 Weak transcription HMEC breast
4 chr1:203372400-203377600 Weak transcription HSMMtube muscle
5 chr1:203372600-203377200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr1:203372600-203377400 Weak transcription Brain Anterior Caudate brain
7 chr1:203372800-203377200 Weak transcription Brain Cingulate Gyrus brain
8 chr1:203373000-203377600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:203373000-203377600 Weak transcription Spleen Spleen
10 chr1:203373600-203379800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:203374000-203377600 Enhancers Colon Smooth Muscle Colon
12 chr1:203374800-203377400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr1:203374800-203378600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:203374800-203379400 Enhancers Fetal Intestine Small intestine
15 chr1:203375000-203378400 Enhancers NHDF-Ad bronchial
16 chr1:203375000-203379600 Enhancers Fetal Intestine Large intestine
17 chr1:203375200-203378400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:203375200-203379000 Enhancers Skeletal Muscle Female skeletal muscle
19 chr1:203375400-203378200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:203375400-203378600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:203375400-203378800 Enhancers Brain Hippocampus Middle brain
22 chr1:203375600-203377800 Enhancers Duodenum Mucosa Duodenum
23 chr1:203375800-203377600 Weak transcription Lung lung
24 chr1:203375800-203379600 Enhancers Brain Angular Gyrus brain
25 chr1:203376000-203377400 Weak transcription Fetal Muscle Leg muscle
26 chr1:203376000-203377400 Enhancers Stomach Smooth Muscle stomach
27 chr1:203376000-203377600 Weak transcription Placenta Placenta
28 chr1:203376000-203377600 Weak transcription Fetal Thymus thymus
29 chr1:203376000-203377600 Weak transcription Right Atrium heart
30 chr1:203376200-203377600 Weak transcription Fetal Muscle Trunk muscle
31 chr1:203376400-203377400 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:203376400-203377400 Weak transcription Brain Substantia Nigra brain
33 chr1:203376400-203377600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:203376400-203377800 Weak transcription Small Intestine intestine
35 chr1:203376400-203380000 Enhancers Rectal Smooth Muscle rectum
36 chr1:203376600-203377400 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr1:203376600-203377600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:203376600-203377600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr1:203376600-203377600 Weak transcription Colonic Mucosa Colon
40 chr1:203376600-203377600 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:203376600-203377600 Weak transcription Fetal Lung lung
42 chr1:203376600-203377600 Weak transcription Fetal Stomach stomach
43 chr1:203376600-203377600 Weak transcription Ovary ovary
44 chr1:203376600-203377600 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:203376600-203377600 Weak transcription Thymus Thymus
46 chr1:203376600-203377800 Weak transcription Aorta Aorta
47 chr1:203376600-203377800 Weak transcription Right Ventricle heart
48 chr1:203376600-203378600 Enhancers Rectal Mucosa Donor 31 rectum
49 chr1:203376600-203379800 Enhancers Duodenum Smooth Muscle Duodenum
50 chr1:203376800-203377200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015