Variant report

Variant	rs10755544
Chromosome Location	chr6:62272667-62272668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1033537	0.81[ASN][1000 genomes]
rs10943373	0.81[AMR][1000 genomes]
rs1117275	0.84[ASN][1000 genomes]
rs13219288	0.82[ASN][1000 genomes]
rs1336347	0.84[ASN][1000 genomes]
rs1336356	0.87[ASN][1000 genomes]
rs1336357	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1336361	0.84[ASN][1000 genomes]
rs1336365	0.84[ASN][1000 genomes]
rs1414803	0.81[ASN][1000 genomes]
rs1414804	0.84[ASN][1000 genomes]
rs1414808	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414810	0.85[ASN][1000 genomes]
rs1577647	0.85[ASN][1000 genomes]
rs1577648	0.85[ASN][1000 genomes]
rs1577649	0.85[ASN][1000 genomes]
rs1855932	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1855933	0.85[ASN][1000 genomes]
rs1855934	0.85[ASN][1000 genomes]
rs1855936	0.85[ASN][1000 genomes]
rs1855938	0.85[ASN][1000 genomes]
rs1883892	0.81[ASN][1000 genomes]
rs1883893	0.81[ASN][1000 genomes]
rs1889906	0.84[ASN][1000 genomes]
rs1889907	0.84[ASN][1000 genomes]
rs1889909	0.84[ASN][1000 genomes]
rs1932662	0.85[ASN][1000 genomes]
rs1932680	0.81[ASN][1000 genomes]
rs1932683	0.83[ASN][1000 genomes]
rs1932684	0.83[ASN][1000 genomes]
rs2179777	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2344114	0.81[ASN][1000 genomes]
rs2344447	0.84[ASN][1000 genomes]
rs3891977	0.84[ASN][1000 genomes]
rs4299810	0.81[ASN][1000 genomes]
rs4311494	0.81[ASN][1000 genomes]
rs4394198	0.83[AMR][1000 genomes]
rs4568427	0.81[ASN][1000 genomes]
rs4636005	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6902906	0.81[ASN][1000 genomes]
rs6908596	0.85[ASN][1000 genomes]
rs6912859	0.85[ASN][1000 genomes]
rs6914619	0.84[ASN][1000 genomes]
rs6917092	0.85[ASN][1000 genomes]
rs6928630	0.84[ASN][1000 genomes]
rs6938984	0.83[ASN][1000 genomes]
rs6938985	0.84[ASN][1000 genomes]
rs6939004	0.84[ASN][1000 genomes]
rs6940162	0.85[ASN][1000 genomes]
rs7752396	0.83[ASN][1000 genomes]
rs7762765	0.84[ASN][1000 genomes]
rs7764358	0.81[ASN][1000 genomes]
rs7764683	0.81[ASN][1000 genomes]
rs9341383	0.84[ASN][1000 genomes]
rs9341395	0.84[ASN][1000 genomes]
rs9341417	0.81[ASN][1000 genomes]
rs9341449	0.84[ASN][1000 genomes]
rs9341451	0.83[ASN][1000 genomes]
rs9342905	0.85[ASN][1000 genomes]
rs9342956	0.81[ASN][1000 genomes]
rs9343302	0.81[ASN][1000 genomes]
rs9343727	0.81[ASN][1000 genomes]
rs9345256	0.82[AMR][1000 genomes]
rs9350510	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350568	0.84[ASN][1000 genomes]
rs9350946	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9350974	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9351844	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351874	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351876	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351930	0.83[ASN][1000 genomes]
rs9351931	0.84[ASN][1000 genomes]
rs9351935	0.84[ASN][1000 genomes]
rs9351937	0.84[ASN][1000 genomes]
rs9351941	0.84[ASN][1000 genomes]
rs9352036	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352069	0.84[ASN][1000 genomes]
rs9352175	0.84[ASN][1000 genomes]
rs9352216	0.81[ASN][1000 genomes]
rs9353013	0.83[AMR][1000 genomes]
rs9359003	0.84[ASN][1000 genomes]
rs9359004	0.84[ASN][1000 genomes]
rs9359021	0.83[ASN][1000 genomes]
rs9360457	0.85[ASN][1000 genomes]
rs9360462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360589	0.84[ASN][1000 genomes]
rs9360591	0.84[ASN][1000 genomes]
rs9360609	0.84[ASN][1000 genomes]
rs9442682	0.85[ASN][1000 genomes]
rs9442692	0.85[ASN][1000 genomes]
rs9443026	0.84[ASN][1000 genomes]
rs9443131	0.84[ASN][1000 genomes]
rs9446531	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs9446578	0.85[ASN][1000 genomes]
rs9446581	0.85[ASN][1000 genomes]
rs9447238	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447438	0.81[ASN][1000 genomes]
rs9447439	0.81[ASN][1000 genomes]
rs9447464	0.81[ASN][1000 genomes]
rs951733	0.84[ASN][1000 genomes]
rs951734	0.84[ASN][1000 genomes]
rs951735	0.84[ASN][1000 genomes]
rs974643	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028700	chr6:61886428-62273898	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1020649	chr6:61886428-62324724	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027837	chr6:61886428-62371376	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032770	chr6:61886428-62411640	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1024450	chr6:61886428-62412025	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1017185	chr6:61886428-62472581	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1018659	chr6:61886428-62620085	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1033794	chr6:61886428-62877254	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1027650	chr6:61886428-62877393	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv603255	chr6:61896616-62651063	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	esv2830165	chr6:61963172-62461924	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv462960	chr6:61963172-62472129	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv603265	chr6:61963172-62472129	Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv462961	chr6:61963172-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv462963	chr6:61963172-62899514	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv603266	chr6:61963172-62899514	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv603267	chr6:61963173-62682069	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
18	nsv603268	chr6:61963173-62899514	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
19	nsv932029	chr6:61967253-62900503	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
20	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
21	nsv462964	chr6:61967504-62361958	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv603269	chr6:61967504-62361958	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv529782	chr6:61971892-62877253	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
24	nsv948423	chr6:61972225-62725552	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
25	nsv1022364	chr6:62019939-62877193	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
26	nsv538261	chr6:62019939-62877193	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
27	nsv821648	chr6:62085769-62357732	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	esv17049	chr6:62178788-62919415	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
29	esv11111	chr6:62178821-62288093	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv603277	chr6:62183901-62899514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
31	nsv1032202	chr6:62236498-62907004	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
32	nsv538262	chr6:62236498-62907004	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
33	nsv1025290	chr6:62236498-62913561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
34	nsv538263	chr6:62236498-62913561	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10755544	KHDRBS2	cis	parietal	SCAN
rs10755544	LGSN	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62272600-62274600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links