Variant report

Variant	rs1075749
Chromosome Location	chr11:15791844-15791845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10832516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs11023705	0.82[EUR][1000 genomes]
rs11023710	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023715	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1484431	0.99[ASN][1000 genomes]
rs1484432	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484436	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1484439	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882133	0.84[MEX][hapmap]
rs4265560	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs900870	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1075749	FAR1	cis	parietal	SCAN
rs1075749	DKK3	cis	cerebellum	SCAN
rs1075749	FGFRL1	trans	brain	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15789600-15792600	Enhancers	Placenta	Placenta
2	chr11:15789600-15792800	Enhancers	Fetal Intestine Small	intestine
3	chr11:15789600-15793200	Enhancers	Fetal Intestine Large	intestine
4	chr11:15789600-15793200	Enhancers	Pancreas	Pancrea
5	chr11:15789800-15792000	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:15790000-15792600	Enhancers	Stomach Mucosa	stomach
7	chr11:15790000-15794400	Weak transcription	Ovary	ovary
8	chr11:15790600-15795000	Weak transcription	Fetal Kidney	kidney
9	chr11:15791000-15792200	Enhancers	Colonic Mucosa	Colon
10	chr11:15791200-15792200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:15791200-15792600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:15791400-15792400	Weak transcription	Gastric	stomach
13	chr11:15791400-15793800	Weak transcription	Fetal Lung	lung
14	chr11:15791400-15796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:15791400-15796800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:15791600-15795800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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