Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15790425..15793867-chr11:15794579..15798775,3	K562	blood:

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1075749	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11023705	0.82[EUR][1000 genomes]
rs11023710	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023715	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1484431	0.99[ASN][1000 genomes]
rs1484432	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484436	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1484439	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882133	0.84[MEX][hapmap]
rs7129677	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs900870	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4265560	FAR1	cis	parietal	SCAN
rs4265560	DKK3	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15786200-15791000	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr11:15789600-15791400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:15789600-15792600	Enhancers	Placenta	Placenta
4	chr11:15789600-15792800	Enhancers	Fetal Intestine Small	intestine
5	chr11:15789600-15793200	Enhancers	Fetal Intestine Large	intestine
6	chr11:15789600-15793200	Enhancers	Pancreas	Pancrea
7	chr11:15789800-15792000	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:15790000-15791000	Weak transcription	Colonic Mucosa	Colon
9	chr11:15790000-15791600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:15790000-15792600	Enhancers	Stomach Mucosa	stomach
11	chr11:15790000-15794400	Weak transcription	Ovary	ovary
12	chr11:15790400-15791200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:15790400-15791200	Active TSS	Rectal Smooth Muscle	rectum
14	chr11:15790400-15791400	Enhancers	Esophagus	oesophagus
15	chr11:15790600-15791200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:15790600-15791200	Enhancers	NHEK	skin
17	chr11:15790600-15791400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:15790600-15791400	Enhancers	Fetal Lung	lung
19	chr11:15790600-15795000	Weak transcription	Fetal Kidney	kidney
20	chr11:15790800-15791000	Enhancers	Rectal Mucosa Donor 31	rectum

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