Variant report

Variant	rs11023705
Chromosome Location	chr11:15766526-15766527
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1075749	0.82[EUR][1000 genomes]
rs10832516	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs11023710	0.88[EUR][1000 genomes]
rs11023715	0.82[EUR][1000 genomes]
rs1484432	0.81[EUR][1000 genomes]
rs1484436	0.98[EUR][1000 genomes]
rs1484439	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1882133	0.83[MEX][hapmap]
rs4265560	0.82[EUR][1000 genomes]
rs7129677	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs900870	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469886	chr11:15615503-15785943	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv482658	chr11:15615503-15785943	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv518531	chr11:15689391-15776274	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11023705	MICALCL	cis	cerebellum	SCAN
rs11023705	PARVA	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15764600-15766600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15764800-15766600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:15764800-15766600	Weak transcription	NH-A	brain
4	chr11:15764800-15768400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:15764800-15768800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15766000-15766800	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:15766400-15767400	Enhancers	HUVEC	blood vessel
8	chr11:15766400-15770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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