Variant report

Variant	rs1075815
Chromosome Location	chr3:134067401-134067402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134024378..134037377-chr3:134063304..134080412,83	MCF-7	breast:
2	chr3:134066447..134072766-chr3:134202428..134206376,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMOTL2-1	chr3:134066130-134068075	ENSG00000260633.1

Variant related genes	Relation type
ENSG00000129055	Chromatin interaction
ENSG00000240006	Chromatin interaction
ENSG00000182923	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73861400	1.00[EUR][1000 genomes]
rs73863806	1.00[EUR][1000 genomes]
rs73863809	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134054200-134069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134054400-134069400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:134055800-134071000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:134058600-134069200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134060600-134067800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:134060600-134070000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:134060800-134072200	Weak transcription	Fetal Kidney	kidney
8	chr3:134061200-134068400	Weak transcription	Fetal Stomach	stomach
9	chr3:134061200-134069000	Weak transcription	Fetal Brain Female	brain
10	chr3:134061400-134073000	Weak transcription	Fetal Brain Male	brain
11	chr3:134065600-134067600	Weak transcription	Brain Germinal Matrix	brain
12	chr3:134065800-134069400	Weak transcription	Liver	Liver
13	chr3:134065800-134071400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:134065800-134071400	Enhancers	Fetal Intestine Large	intestine
15	chr3:134065800-134071600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:134065800-134072400	Weak transcription	Spleen	Spleen
17	chr3:134066000-134068400	Enhancers	Fetal Intestine Small	intestine
18	chr3:134066000-134072800	Enhancers	Duodenum Mucosa	Duodenum
19	chr3:134066200-134068400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:134066200-134069400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:134066200-134069600	Weak transcription	A549	lung
22	chr3:134066200-134071000	Weak transcription	Brain Substantia Nigra	brain
23	chr3:134066400-134068000	Enhancers	Adipose Nuclei	Adipose
24	chr3:134066400-134068200	Enhancers	Gastric	stomach
25	chr3:134066400-134071400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr3:134066400-134071600	Weak transcription	Fetal Lung	lung
27	chr3:134066400-134071600	Enhancers	Placenta	Placenta
28	chr3:134066400-134073000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:134066600-134068000	Enhancers	Stomach Mucosa	stomach
30	chr3:134066600-134068200	Enhancers	Aorta	Aorta
31	chr3:134066600-134068200	Enhancers	Fetal Muscle Leg	muscle
32	chr3:134066600-134068200	Enhancers	HSMMtube	muscle
33	chr3:134066600-134069800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:134066600-134071800	Enhancers	Placenta Amnion	Placenta Amnion
35	chr3:134066600-134076200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:134066800-134067600	Weak transcription	Psoas Muscle	Psoas
37	chr3:134066800-134069600	Weak transcription	HepG2	liver
38	chr3:134066800-134073000	Weak transcription	Ovary	ovary
39	chr3:134067000-134068200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:134067000-134068200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:134067000-134068200	Enhancers	Left Ventricle	heart
42	chr3:134067000-134068200	Enhancers	HSMM	muscle
43	chr3:134067000-134068200	Enhancers	Osteobl	bone
44	chr3:134067000-134068400	Enhancers	NHDF-Ad	bronchial
45	chr3:134067000-134068400	Enhancers	NHEK	skin
46	chr3:134067000-134073400	Enhancers	Pancreas	Pancrea
47	chr3:134067200-134067600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:134067200-134068000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:134067200-134068000	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr3:134067200-134068000	Enhancers	Right Atrium	heart

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