Variant report

Variant	rs73863806
Chromosome Location	chr3:134107898-134107899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134107138..134109497-chr3:134202538..134204336,2	MCF-7	breast:
2	chr3:134107152..134109398-chr3:134114324..134116029,2	MCF-7	breast:
3	chr3:134104354..134106982-chr3:134107701..134111001,3	MCF-7	breast:
4	chr3:134106356..134108650-chr3:134115568..134117302,2	MCF-7	breast:
5	chr3:134031326..134033376-chr3:134106151..134108476,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240006	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1075815	1.00[EUR][1000 genomes]
rs73861400	1.00[EUR][1000 genomes]
rs73863809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
2	chr3:134101200-134108000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:134101400-134111600	Weak transcription	Pancreas	Pancrea
4	chr3:134102000-134111600	Weak transcription	Esophagus	oesophagus
5	chr3:134104200-134108000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:134104200-134108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134104800-134108000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:134106200-134108600	Enhancers	Fetal Muscle Leg	muscle
9	chr3:134106600-134108200	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:134107000-134108400	Enhancers	Brain Germinal Matrix	brain
11	chr3:134107000-134108600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:134107200-134108200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:134107200-134108200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:134107200-134108200	Enhancers	Fetal Brain Female	brain
15	chr3:134107200-134108400	Enhancers	Brain Anterior Caudate	brain
16	chr3:134107400-134108000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:134107400-134108000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:134107400-134108200	Enhancers	Fetal Lung	lung
19	chr3:134107400-134108400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:134107400-134108400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:134107400-134108400	Enhancers	Brain Substantia Nigra	brain
22	chr3:134107400-134108400	Enhancers	Colon Smooth Muscle	Colon
23	chr3:134107600-134108200	Enhancers	Fetal Brain Male	brain
24	chr3:134107600-134108200	Enhancers	Fetal Stomach	stomach
25	chr3:134107600-134108200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:134107600-134108400	Enhancers	Brain Hippocampus Middle	brain
27	chr3:134107800-134108000	Enhancers	Stomach Smooth Muscle	stomach
28	chr3:134107800-134108200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:134107800-134108200	Enhancers	NHDF-Ad	bronchial
30	chr3:134107800-134108200	Enhancers	NHEK	skin
31	chr3:134107800-134108400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:134107800-134108400	Enhancers	Brain Angular Gyrus	brain
33	chr3:134107800-134108400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr3:134107800-134108400	Enhancers	Lung	lung
35	chr3:134107800-134108400	Enhancers	Rectal Smooth Muscle	rectum
36	chr3:134107800-134108600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:134107800-134111200	Weak transcription	Right Ventricle	heart

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