Variant report

Variant	rs73863809
Chromosome Location	chr3:134108246-134108247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134107138..134109497-chr3:134202538..134204336,2	MCF-7	breast:
2	chr3:134107152..134109398-chr3:134114324..134116029,2	MCF-7	breast:
3	chr3:134104354..134106982-chr3:134107701..134111001,3	MCF-7	breast:
4	chr3:134106356..134108650-chr3:134115568..134117302,2	MCF-7	breast:
5	chr3:134031326..134033376-chr3:134106151..134108476,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240006	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1075815	1.00[EUR][1000 genomes]
rs73861400	1.00[EUR][1000 genomes]
rs73863806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
2	chr3:134101400-134111600	Weak transcription	Pancreas	Pancrea
3	chr3:134102000-134111600	Weak transcription	Esophagus	oesophagus
4	chr3:134106200-134108600	Enhancers	Fetal Muscle Leg	muscle
5	chr3:134107000-134108400	Enhancers	Brain Germinal Matrix	brain
6	chr3:134107000-134108600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:134107200-134108400	Enhancers	Brain Anterior Caudate	brain
8	chr3:134107400-134108400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:134107400-134108400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:134107400-134108400	Enhancers	Brain Substantia Nigra	brain
11	chr3:134107400-134108400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:134107600-134108400	Enhancers	Brain Hippocampus Middle	brain
13	chr3:134107800-134108400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:134107800-134108400	Enhancers	Brain Angular Gyrus	brain
15	chr3:134107800-134108400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:134107800-134108400	Enhancers	Lung	lung
17	chr3:134107800-134108400	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:134107800-134108600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:134107800-134111200	Weak transcription	Right Ventricle	heart
20	chr3:134108000-134108400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:134108000-134108400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:134108000-134108400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:134108000-134108400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134108200-134108400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:134108200-134108400	Enhancers	Stomach Smooth Muscle	stomach
26	chr3:134108200-134108600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr3:134108200-134110800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:134108200-134111200	Weak transcription	Brain Cingulate Gyrus	brain

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