Variant report

Variant	rs1076035
Chromosome Location	chr6:164166578-164166579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164164066..164167011-chr6:164170527..164172238,3	K562	blood:
2	chr6:164161305..164164067-chr6:164164278..164167269,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10945915	0.88[EUR][1000 genomes]
rs12196308	0.87[EUR][1000 genomes]
rs17592898	0.87[EUR][1000 genomes]
rs34737884	0.89[EUR][1000 genomes]
rs767380	0.87[EUR][1000 genomes]
rs9283864	0.88[EUR][1000 genomes]
rs9346970	0.87[EUR][1000 genomes]
rs9347777	0.88[EUR][1000 genomes]
rs9347781	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9356134	0.85[EUR][1000 genomes]
rs9356135	0.87[EUR][1000 genomes]
rs9356136	0.89[EUR][1000 genomes]
rs9365600	0.85[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164160600-164168000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:164161200-164166800	Weak transcription	Fetal Lung	lung
3	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:164164600-164167800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:164164800-164167200	Enhancers	Left Ventricle	heart
6	chr6:164164800-164167800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:164165000-164167000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:164165200-164167400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:164165400-164166600	Enhancers	Right Atrium	heart
10	chr6:164165400-164167200	Enhancers	Brain Germinal Matrix	brain
11	chr6:164165400-164167400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:164165400-164167600	Enhancers	Placenta	Placenta
13	chr6:164165600-164167600	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:164165600-164167800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:164165800-164166800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:164165800-164167000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:164165800-164167600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:164166000-164166800	Flanking Active TSS	Fetal Heart	heart
19	chr6:164166000-164167400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:164166200-164166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:164166200-164166800	Enhancers	Adipose Nuclei	Adipose
22	chr6:164166200-164167200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:164166200-164167200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:164166200-164167200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr6:164166200-164167400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:164166200-164167400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:164166200-164167400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:164166200-164167400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:164166200-164167400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:164166200-164167400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:164166200-164167400	Enhancers	Psoas Muscle	Psoas
32	chr6:164166200-164167400	Enhancers	NHDF-Ad	bronchial
33	chr6:164166200-164167600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:164166200-164167600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:164166200-164167600	Enhancers	NH-A	brain
36	chr6:164166200-164168600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:164166400-164167400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:164166400-164167400	Enhancers	HSMMtube	muscle
39	chr6:164166400-164167800	Enhancers	HSMM	muscle
40	chr6:164166400-164169000	Weak transcription	Right Ventricle	heart
41	chr6:164166400-164170200	Weak transcription	Fetal Brain Male	brain

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