Variant report

Variant	rs9347781
Chromosome Location	chr6:164155654-164155655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1076035	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945915	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164146400-164158000	Weak transcription	Spleen	Spleen
2	chr6:164150200-164156000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:164151000-164156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:164152200-164161000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:164152200-164162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:164152600-164155800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164152600-164161600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:164153600-164156000	Weak transcription	K562	blood
9	chr6:164154000-164156000	Weak transcription	GM12878-XiMat	blood
10	chr6:164154600-164155800	Weak transcription	HSMMtube	muscle
11	chr6:164154600-164159400	Weak transcription	Left Ventricle	heart
12	chr6:164154800-164156800	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:164154800-164159200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:164154800-164159200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:164154800-164160800	Weak transcription	Fetal Heart	heart
16	chr6:164154800-164161000	Weak transcription	Right Atrium	heart
17	chr6:164154800-164161200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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