Variant report

Variant	rs10945915
Chromosome Location	chr6:164146566-164146567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164142799..164145043-chr6:164145124..164147466,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1076035	0.88[EUR][1000 genomes]
rs12196308	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17592898	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34737884	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs766165	0.90[ASN][1000 genomes]
rs767380	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283864	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346970	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347776	0.82[ASN][1000 genomes]
rs9347777	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347779	0.82[CHD][hapmap]
rs9347781	0.90[EUR][1000 genomes]
rs9356130	0.84[ASN][1000 genomes]
rs9356134	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9356135	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9356136	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9365600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164131000-164151600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164133600-164151400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:164134400-164154200	Weak transcription	Right Atrium	heart
4	chr6:164145000-164147400	Enhancers	Brain Germinal Matrix	brain
5	chr6:164145400-164147200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:164145800-164146600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164146000-164146800	Enhancers	Fetal Heart	heart
8	chr6:164146000-164147000	Enhancers	Fetal Brain Female	brain
9	chr6:164146200-164146800	Enhancers	K562	blood
10	chr6:164146200-164147000	Enhancers	Fetal Brain Male	brain
11	chr6:164146200-164147000	Enhancers	Placenta	Placenta
12	chr6:164146200-164147200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:164146200-164150200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:164146200-164150800	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:164146400-164146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:164146400-164147000	Enhancers	Primary B cells from cord blood	blood
17	chr6:164146400-164147000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:164146400-164147200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:164146400-164147200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:164146400-164151600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:164146400-164151600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:164146400-164158000	Weak transcription	Spleen	Spleen

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