Variant report

Variant	rs10760797
Chromosome Location	chr9:104384814-104384815
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10118878	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10120502	0.86[AFR][1000 genomes]
rs1016428	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10819957	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10819966	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989567	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10989568	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10989573	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989574	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12685902	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1323431	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1407876	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2067056	0.81[CEU][hapmap]
rs2485522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2485525	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2485528	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2485533	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2485534	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28379324	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4743474	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6415853	0.81[EUR][1000 genomes]
rs729688	0.83[EUR][1000 genomes]
rs7849782	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7854555	0.83[EUR][1000 genomes]
rs7861051	0.83[EUR][1000 genomes]
rs7875712	0.82[EUR][1000 genomes]
rs9299347	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104362000-104387400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:104382400-104392200	Weak transcription	Liver	Liver

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