Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104463930..104467725-chr9:104467754..104469771,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10118878	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1016428	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10760797	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10760802	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10760806	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10760807	0.82[AMR][1000 genomes]
rs10819957	0.84[EUR][1000 genomes]
rs10819966	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10989567	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10989568	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10989573	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10989574	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1323431	0.81[EUR][1000 genomes]
rs2050640	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2067056	0.89[CEU][hapmap]
rs2184959	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2485522	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485525	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485533	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485534	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3983721	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4278209	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479063	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7020375	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7849782	0.85[EUR][1000 genomes]
rs7872456	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104468000-104469400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:104468000-104469800	Enhancers	Fetal Intestine Small	intestine
3	chr9:104468000-104470000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:104468000-104474400	Weak transcription	Pancreas	Pancrea
5	chr9:104468200-104471400	Enhancers	Fetal Lung	lung
6	chr9:104468400-104469400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:104468400-104469400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr9:104468800-104469400	Flanking Active TSS	Liver	Liver
9	chr9:104468800-104470800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:104469000-104469600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr9:104469000-104469800	Enhancers	Fetal Intestine Large	intestine
12	chr9:104469000-104470600	Enhancers	Adipose Nuclei	Adipose
13	chr9:104469200-104469400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:104469200-104469600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr9:104469200-104470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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