Variant report

Variant	rs2485533
Chromosome Location	chr9:104449898-104449899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104441179..104443367-chr9:104448568..104451134,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10118878	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1016428	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10760797	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10760802	0.81[EUR][1000 genomes]
rs10760806	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819957	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10819966	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10989567	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10989568	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10989573	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10989574	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12351943	0.81[EUR][1000 genomes]
rs12352862	0.81[EUR][1000 genomes]
rs1323431	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1407871	0.81[EUR][1000 genomes]
rs1951781	0.81[EUR][1000 genomes]
rs2050640	0.81[EUR][1000 genomes]
rs2067056	0.80[CEU][hapmap]
rs2184959	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2485522	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485525	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485528	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485534	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3983721	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4278209	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479063	0.80[EUR][1000 genomes]
rs7035242	0.81[EUR][1000 genomes]
rs7849782	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104446400-104451200	Weak transcription	Fetal Lung	lung
2	chr9:104446400-104451800	Weak transcription	Fetal Brain Male	brain

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