Variant report

Variant	rs10761323
Chromosome Location	chr9:96951145-96951146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96945873..96948322-chr9:96948466..96951194,2	MCF-7	breast:
2	chr9:96761819..96764816-chr9:96950228..96952225,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10512230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821303	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10821305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821306	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821310	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821311	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821316	0.88[EUR][1000 genomes]
rs10821317	0.95[CEU][hapmap];0.80[CHB][hapmap];0.88[EUR][1000 genomes]
rs10993072	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993073	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993074	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993075	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993095	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993096	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs10993097	0.88[EUR][1000 genomes]
rs10993100	0.88[EUR][1000 genomes]
rs11790972	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12004367	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs12551019	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13293512	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2039012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34181781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36030019	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7030004	0.96[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs7865876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7866254	0.82[CHB][hapmap]
rs9409498	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs9409706	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9409709	0.96[CEU][hapmap];0.82[CHB][hapmap]
rs9409710	0.96[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96931400-96965600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:96937200-96959400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:96939800-96960800	Weak transcription	NHDF-Ad	bronchial
4	chr9:96940400-96955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:96941400-96959400	Weak transcription	Spleen	Spleen
6	chr9:96942400-96953200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:96942400-96957600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:96942400-96964000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:96943000-96952200	Weak transcription	HMEC	breast
10	chr9:96944400-96959400	Weak transcription	Psoas Muscle	Psoas
11	chr9:96945000-96955000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:96945200-96951600	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:96945200-96955200	Weak transcription	Fetal Heart	heart
14	chr9:96946000-96951400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:96946200-96953200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:96946200-96957000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:96946200-96959400	Weak transcription	Aorta	Aorta
18	chr9:96946200-96962800	Weak transcription	Gastric	stomach
19	chr9:96946200-96965000	Weak transcription	NHLF	lung
20	chr9:96946600-96954000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:96946800-96955200	Weak transcription	HSMMtube	muscle
22	chr9:96946800-96955400	Weak transcription	NH-A	brain
23	chr9:96946800-96957200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:96946800-96957800	Weak transcription	Primary T cells from cord blood	blood
25	chr9:96946800-96965400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:96947000-96955200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:96947000-96957400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:96947000-96959400	Weak transcription	Left Ventricle	heart
29	chr9:96947000-96959800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:96947000-96966200	Weak transcription	Fetal Kidney	kidney
31	chr9:96947200-96959200	Weak transcription	NHEK	skin
32	chr9:96949400-96951200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:96949400-96952200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:96949400-96960200	Weak transcription	Placenta	Placenta
35	chr9:96949600-96951200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:96949800-96951200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr9:96949800-96957000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:96950000-96955200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:96950000-96955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:96950000-96955200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:96950000-96955200	Weak transcription	Osteobl	bone
42	chr9:96950600-96951200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:96950600-96951200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:96950800-96951200	ZNF genes & repeats	HSMM	muscle
45	chr9:96951000-96951200	Active TSS	Brain Angular Gyrus	brain
46	chr9:96951000-96954800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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