Variant report

Variant	rs10821317
Chromosome Location	chr9:96975668-96975669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96773554..96776449-chr9:96974238..96977177,2	MCF-7	breast:
2	chr9:96827476..96828423-chr9:96975652..96976389,3	MCF-7	breast:
3	chr9:96776075..96777015-chr9:96975452..96976127,3	K562	blood:
4	chr9:96827200..96828396-chr9:96975283..96976482,6	MCF-7	breast:
5	chr9:96728228..96728857-chr9:96975376..96976025,2	K562	blood:
6	chr9:96776042..96777028-chr9:96975491..96976419,9	MCF-7	breast:
7	chr9:96941289..96943045-chr9:96974462..96976408,2	K562	blood:
8	chr9:96776018..96777153-chr9:96975464..96976521,5	MCF-7	breast:
9	chr9:96727836..96728378-chr9:96975555..96976476,2	MCF-7	breast:
10	chr9:96826366..96828464-chr9:96974329..96976102,2	MCF-7	breast:
11	chr9:96789976..96794362-chr9:96971656..96977390,6	MCF-7	breast:
12	chr9:96794550..96796136-chr9:96973906..96976177,2	K562	blood:
13	chr9:96758926..96759805-chr9:96975442..96976389,4	MCF-7	breast:
14	chr9:96827423..96828438-chr9:96975497..96976368,7	K562	blood:
15	chr9:96725158..96725897-chr9:96975460..96976466,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10512230	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10739971	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10739973	0.84[ASN][1000 genomes]
rs10761320	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10761323	0.88[EUR][1000 genomes]
rs10761324	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs10821305	0.85[EUR][1000 genomes]
rs10821306	0.85[EUR][1000 genomes]
rs10821310	0.84[EUR][1000 genomes]
rs10821311	0.88[EUR][1000 genomes]
rs10821316	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993072	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10993073	0.85[EUR][1000 genomes]
rs10993074	0.85[EUR][1000 genomes]
rs10993075	0.81[EUR][1000 genomes]
rs10993095	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993097	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993100	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11790972	0.88[EUR][1000 genomes]
rs12004367	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12551019	0.88[EUR][1000 genomes]
rs13293512	0.86[EUR][1000 genomes]
rs2039012	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2263455	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2675275	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs34181781	0.88[EUR][1000 genomes]
rs36030019	0.84[EUR][1000 genomes]
rs7025395	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs7030004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7865876	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs9409498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9409706	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9409710	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
4	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96974200-96976000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:96974400-96976200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:96974400-96976400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:96974400-96976600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:96975000-96976000	Weak transcription	K562	blood
6	chr9:96975400-96978400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96975600-96976000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:96975600-96976200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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