Variant report

Variant	rs10821306
Chromosome Location	chr9:96921402-96921403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96912919..96916926-chr9:96917380..96923023,7	K562	blood:
2	chr9:96849522..96851731-chr9:96920134..96921738,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10512230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761323	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10761324	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821310	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821316	0.85[EUR][1000 genomes]
rs10821317	0.85[EUR][1000 genomes]
rs10993072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993073	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993075	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993095	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10993096	0.85[EUR][1000 genomes]
rs10993097	0.85[EUR][1000 genomes]
rs10993100	0.85[EUR][1000 genomes]
rs11790972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12004367	0.84[EUR][1000 genomes]
rs12551019	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13293512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2039012	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34181781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36030019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7025395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030004	0.85[EUR][1000 genomes]
rs7865876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9409706	0.85[EUR][1000 genomes]
rs9409710	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
2	chr9:96918400-96921600	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:96918800-96922400	Enhancers	HepG2	liver
4	chr9:96919000-96922400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:96919200-96924000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:96919400-96921600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:96919400-96921600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:96919400-96921600	Weak transcription	NHLF	lung
9	chr9:96919400-96925800	Weak transcription	Spleen	Spleen
10	chr9:96919400-96927600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:96919400-96927800	Weak transcription	Psoas Muscle	Psoas
12	chr9:96919600-96921600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:96919600-96921600	Weak transcription	Fetal Lung	lung
14	chr9:96919600-96921600	Weak transcription	Osteobl	bone
15	chr9:96919600-96922000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:96919600-96922000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:96919600-96922800	Weak transcription	Esophagus	oesophagus
18	chr9:96919600-96926000	Weak transcription	Primary T cells from cord blood	blood
19	chr9:96919600-96927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:96919600-96927800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:96919800-96921600	Weak transcription	Fetal Heart	heart
22	chr9:96919800-96927200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:96920000-96921600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:96920000-96921600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:96920000-96921600	Weak transcription	Fetal Kidney	kidney
26	chr9:96920000-96921600	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:96920000-96923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr9:96920000-96923200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:96920000-96927400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:96920000-96927800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:96920000-96927800	Weak transcription	Left Ventricle	heart
32	chr9:96920000-96927800	Weak transcription	Pancreas	Pancrea
33	chr9:96920000-96927800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:96920200-96921600	Weak transcription	NH-A	brain
35	chr9:96920200-96922800	Weak transcription	A549	lung
36	chr9:96920200-96927600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:96920800-96922400	Enhancers	Placenta	Placenta
38	chr9:96921000-96922400	Enhancers	Brain Anterior Caudate	brain
39	chr9:96921000-96922800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:96921000-96922800	Enhancers	Fetal Stomach	stomach
41	chr9:96921000-96924200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:96921200-96921800	Enhancers	K562	blood
43	chr9:96921200-96922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:96921400-96921600	Enhancers	Aorta	Aorta
45	chr9:96921400-96921600	Enhancers	Brain Substantia Nigra	brain
46	chr9:96921400-96921800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:96921400-96921800	Enhancers	Stomach Smooth Muscle	stomach
48	chr9:96921400-96921800	Enhancers	HSMM	muscle
49	chr9:96921400-96922200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:96921400-96922200	Enhancers	Brain Angular Gyrus	brain

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