Variant report

Variant	rs10761382
Chromosome Location	chr9:98105316-98105317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98104888..98106927-chr9:98272777..98274676,2	MCF-7	breast:
2	chr9:98103184..98105330-chr9:98187683..98189583,2	MCF-7	breast:
3	chr9:98103672..98105349-chr9:98272991..98274766,2	K562	blood:
4	chr9:98103117..98105950-chr9:98116720..98118774,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237857	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1027710	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10739992	0.85[CEU][hapmap]
rs10761387	0.84[EUR][1000 genomes]
rs10821455	0.88[CEU][hapmap]
rs10821458	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821459	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821461	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821462	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10993518	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1979022	0.85[CEU][hapmap]
rs2031599	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs2036516	0.89[EUR][1000 genomes]
rs2166402	0.85[CEU][hapmap]
rs2297596	0.85[CEU][hapmap]
rs2297597	0.88[CEU][hapmap]
rs3277	0.88[CEU][hapmap]
rs35081772	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3737142	0.88[CEU][hapmap]
rs3780568	0.85[CEU][hapmap]
rs3844341	0.89[CEU][hapmap]
rs3852402	0.88[CEU][hapmap]
rs4647382	0.88[CEU][hapmap]
rs4647459	0.85[CEU][hapmap]
rs4647462	0.88[CEU][hapmap]
rs4647475	0.89[CEU][hapmap]
rs4743993	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744446	0.89[CEU][hapmap]
rs4744451	0.85[CEU][hapmap]
rs4744454	0.83[EUR][1000 genomes]
rs4744455	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744459	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7026047	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027204	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7850958	0.85[CEU][hapmap]
rs7854570	0.88[CEU][hapmap]
rs7858493	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs963774	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98103600-98105400	Enhancers	Fetal Heart	heart
2	chr9:98104200-98105600	Weak transcription	Fetal Lung	lung
3	chr9:98105000-98105800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:98105000-98105800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:98105000-98106000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:98105000-98106200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:98105200-98105400	Enhancers	K562	blood

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