Variant report

Variant	rs7858493
Chromosome Location	chr9:98126641-98126642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1027710	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10739992	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs10761382	0.93[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761387	0.86[EUR][1000 genomes]
rs10821455	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs10821458	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821459	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821461	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821462	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993518	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979022	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2031599	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs2036516	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2297596	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2297597	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs35081772	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737142	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs3844341	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs3852402	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs4647382	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs4647459	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4647462	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs4647475	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs4743993	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744446	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs4744451	0.85[CEU][hapmap]
rs4744455	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744459	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7026047	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027204	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs7034538	0.87[JPT][hapmap]
rs7850958	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs7854570	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs963774	0.88[CEU][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98123400-98131000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98123600-98127800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:98123600-98127800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:98123600-98128800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:98125200-98127000	Enhancers	Fetal Kidney	kidney
6	chr9:98125600-98129000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:98125600-98129200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98125800-98127200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:98125800-98127400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:98125800-98127800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98126000-98127200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98126000-98127200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:98126000-98127800	Weak transcription	Fetal Stomach	stomach
14	chr9:98126000-98131800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:98126000-98132000	Weak transcription	HSMMtube	muscle
16	chr9:98126200-98127200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:98126200-98127600	Weak transcription	Fetal Brain Female	brain

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