Variant report

Variant	rs4744459
Chromosome Location	chr9:98132921-98132922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1027710	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10761382	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761387	0.84[EUR][1000 genomes]
rs10821458	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821459	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821461	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821462	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993518	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2036516	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081772	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743993	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744455	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7026047	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7858493	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98128000-98139200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98131400-98134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:98132000-98133200	Enhancers	HSMMtube	muscle
4	chr9:98132800-98134800	Weak transcription	Pancreas	Pancrea
5	chr9:98132800-98135400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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