Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466028	0.98[ASN][1000 genomes]
rs10733889	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740402	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740403	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10762514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11000264	0.98[ASN][1000 genomes]
rs11000271	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16925235	0.98[ASN][1000 genomes]
rs2339896	0.98[ASN][1000 genomes]
rs2339898	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339902	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879634	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935293	0.91[ASN][1000 genomes]
rs4935294	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935295	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935296	0.92[ASN][1000 genomes]
rs7073794	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092197	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095482	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73339224	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53707600-53713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:53710200-53711200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:53710200-53711800	Enhancers	Fetal Stomach	stomach
4	chr10:53710400-53711400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:53710600-53711600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:53710600-53711600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:53710600-53713000	Weak transcription	Aorta	Aorta
8	chr10:53710800-53711200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:53710800-53711800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:53710800-53712000	Weak transcription	Psoas Muscle	Psoas
11	chr10:53710800-53712400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:53710800-53713200	Weak transcription	Ovary	ovary
13	chr10:53710800-53713400	Enhancers	Fetal Lung	lung
14	chr10:53711000-53712200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:53711000-53712200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:53711000-53714000	Weak transcription	Left Ventricle	heart
17	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell

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