Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466028	0.98[ASN][1000 genomes]
rs10733889	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740402	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740403	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740404	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10762513	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10762514	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11000264	0.98[ASN][1000 genomes]
rs11000271	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16925235	0.98[ASN][1000 genomes]
rs2339896	0.98[ASN][1000 genomes]
rs2339898	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879634	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935293	0.91[ASN][1000 genomes]
rs4935294	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935295	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935296	0.92[ASN][1000 genomes]
rs7073794	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092197	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095482	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73339224	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53697000-53698000	Enhancers	Fetal Lung	lung
2	chr10:53697400-53698000	Active TSS	Ovary	ovary
3	chr10:53697600-53698000	Flanking Active TSS	NHDF-Ad	bronchial
4	chr10:53697800-53698000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:53697800-53698000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:53697800-53698000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:53697800-53698000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:53697800-53698000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:53697800-53698000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:53697800-53698000	Enhancers	HSMMtube	muscle
11	chr10:53697800-53698000	Flanking Active TSS	NHLF	lung

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