Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466028	1.00[ASN][1000 genomes]
rs10733889	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740403	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740404	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10762513	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10762514	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11000264	1.00[ASN][1000 genomes]
rs11000271	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925235	1.00[ASN][1000 genomes]
rs2339896	1.00[ASN][1000 genomes]
rs2339898	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2339902	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2879634	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935293	0.90[ASN][1000 genomes]
rs4935294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935296	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073794	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092197	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095482	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339224	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3393195	chr10:53716196-53718044	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:53713400-53720600	Weak transcription	Fetal Stomach	stomach
3	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
4	chr10:53713800-53720400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:53714600-53716600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:53715200-53720400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:53715800-53716600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:53715800-53720000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:53715800-53720400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:53716000-53720400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:53716000-53720400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:53716000-53720400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:53716000-53720400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:53716000-53720400	Weak transcription	NHDF-Ad	bronchial
15	chr10:53716400-53719800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:53716400-53720400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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