Variant report

Variant	rs10763500
Chromosome Location	chr10:52232694-52232695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52229968..52233210-chr10:52382214..52385931,3	MCF-7	breast:
2	chr10:52176233..52179172-chr10:52229395..52232901,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10458673	0.81[ASN][1000 genomes]
rs10508927	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10508928	0.82[JPT][hapmap]
rs10508929	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10733968	0.82[EUR][1000 genomes]
rs10740684	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10763373	0.82[JPT][hapmap]
rs10763382	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10763392	0.92[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs10763426	0.88[ASN][1000 genomes]
rs10825789	0.82[JPT][hapmap]
rs10825859	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10825861	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10825882	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10825904	0.84[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10825934	0.88[ASN][1000 genomes]
rs10825978	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10825995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10825996	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10826013	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10826033	0.98[ASN][1000 genomes]
rs10826036	0.99[ASN][1000 genomes]
rs11005356	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11005399	0.82[JPT][hapmap]
rs11005418	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11005579	0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11005614	0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11005621	0.89[ASN][1000 genomes]
rs11005761	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11005803	0.99[ASN][1000 genomes]
rs11005884	0.98[ASN][1000 genomes]
rs12217648	0.88[ASN][1000 genomes]
rs12219070	0.84[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1884572	0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1916572	0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2144863	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2339400	0.92[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2339401	0.84[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs2339503	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2339507	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34122137	0.87[ASN][1000 genomes]
rs3739989	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4935165	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935728	0.92[ASN][1000 genomes]
rs7079881	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086029	0.83[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7090807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092749	0.82[JPT][hapmap]
rs7093878	0.81[EUR][1000 genomes]
rs7094029	0.81[EUR][1000 genomes]
rs7096968	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs768185	0.82[JPT][hapmap]
rs7896315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7920818	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7922802	0.88[JPT][hapmap]
rs910817	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927047	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927048	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52208000-52240200	Weak transcription	Esophagus	oesophagus
2	chr10:52218000-52240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:52220000-52243600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:52220400-52237800	Weak transcription	Ovary	ovary
5	chr10:52229800-52242600	Weak transcription	Thymus	Thymus
6	chr10:52229800-52244000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:52229800-52252000	Weak transcription	Aorta	Aorta
8	chr10:52230000-52233600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:52230000-52237600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:52230000-52240000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:52230400-52233400	Weak transcription	Left Ventricle	heart
12	chr10:52230400-52233600	Weak transcription	Gastric	stomach
13	chr10:52230400-52233600	Weak transcription	Pancreas	Pancrea
14	chr10:52230400-52233600	Weak transcription	Right Ventricle	heart
15	chr10:52230400-52236200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:52230400-52236400	Weak transcription	Primary B cells from cord blood	blood
17	chr10:52230400-52236400	Weak transcription	Lung	lung
18	chr10:52230400-52240000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:52230600-52233600	Weak transcription	Right Atrium	heart
20	chr10:52230600-52233600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:52230600-52236000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:52230600-52236400	Weak transcription	Fetal Thymus	thymus
23	chr10:52230600-52256400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:52231000-52233400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:52231000-52235400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:52231000-52235800	Weak transcription	HSMM	muscle
27	chr10:52231000-52236200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:52231000-52236200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:52231000-52236400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:52231000-52237600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:52231000-52239400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:52231200-52233400	Weak transcription	Small Intestine	intestine
33	chr10:52231200-52233600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:52231200-52233600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:52231200-52233600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:52231200-52235000	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:52231200-52236200	Weak transcription	Fetal Lung	lung
38	chr10:52231200-52236400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:52231200-52236400	Weak transcription	Liver	Liver
40	chr10:52231200-52236400	Weak transcription	Fetal Intestine Large	intestine
41	chr10:52231200-52236400	Weak transcription	Fetal Intestine Small	intestine
42	chr10:52231200-52236400	Weak transcription	Spleen	Spleen
43	chr10:52231200-52240000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:52231200-52240200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:52231200-52242000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:52231200-52244600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:52231200-52257800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:52231400-52233000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:52231400-52233400	Weak transcription	GM12878-XiMat	blood
50	chr10:52231400-52233600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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