Variant report

Variant	rs10826033
Chromosome Location	chr10:52223153-52223154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52220084..52221898-chr10:52222216..52224809,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10458673	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10508927	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10508929	0.89[ASN][1000 genomes]
rs10740684	0.89[ASN][1000 genomes]
rs10763382	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10763426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10763500	0.98[ASN][1000 genomes]
rs10825859	0.83[ASN][1000 genomes]
rs10825861	0.85[ASN][1000 genomes]
rs10825882	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10825904	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10825934	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10825978	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10825995	0.96[ASN][1000 genomes]
rs10825996	0.96[ASN][1000 genomes]
rs10826013	0.96[ASN][1000 genomes]
rs10826034	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10826036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826169	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11005356	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11005418	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11005579	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11005614	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11005621	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11005761	0.98[ASN][1000 genomes]
rs11005803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11005884	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006054	0.91[AMR][1000 genomes]
rs11006075	0.89[AMR][1000 genomes]
rs12217648	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12219070	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219692	0.81[AFR][1000 genomes]
rs1884572	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1916572	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024872	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2144863	0.95[ASN][1000 genomes]
rs2273402	0.97[ASN][1000 genomes]
rs2339503	0.97[ASN][1000 genomes]
rs2339507	0.95[ASN][1000 genomes]
rs34122137	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3739989	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4935165	0.98[ASN][1000 genomes]
rs4935711	0.97[ASN][1000 genomes]
rs4935728	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079881	0.94[ASN][1000 genomes]
rs7086029	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7090807	0.98[ASN][1000 genomes]
rs7896315	0.97[ASN][1000 genomes]
rs7920818	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7922802	0.91[EUR][1000 genomes]
rs910817	0.94[ASN][1000 genomes]
rs927047	0.94[ASN][1000 genomes]
rs927048	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52192400-52229400	Weak transcription	Aorta	Aorta
2	chr10:52192400-52230400	Weak transcription	HSMM	muscle
3	chr10:52197800-52229800	Weak transcription	Gastric	stomach
4	chr10:52204400-52228600	Weak transcription	NHDF-Ad	bronchial
5	chr10:52208000-52240200	Weak transcription	Esophagus	oesophagus
6	chr10:52208200-52229600	Weak transcription	Right Ventricle	heart
7	chr10:52208400-52230400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:52209600-52229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:52211600-52223800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:52211800-52229400	Weak transcription	NHEK	skin
11	chr10:52212800-52229400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:52212800-52229600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:52215000-52230400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:52215200-52228800	Weak transcription	HepG2	liver
15	chr10:52215200-52229000	Weak transcription	Brain Angular Gyrus	brain
16	chr10:52215600-52228600	Weak transcription	HSMMtube	muscle
17	chr10:52215800-52228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:52216400-52228600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:52217200-52229600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:52218000-52240200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:52218200-52228800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:52218200-52230800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:52218400-52229400	Weak transcription	A549	lung
24	chr10:52218600-52228400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:52219000-52223400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:52219000-52223600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:52219400-52226000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:52219800-52229000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:52220000-52243600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:52220200-52230400	Weak transcription	Hela-S3	cervix
31	chr10:52220400-52223600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:52220400-52224000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:52220400-52224000	Weak transcription	Fetal Heart	heart
34	chr10:52220400-52226800	Weak transcription	Fetal Brain Male	brain
35	chr10:52220400-52227600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:52220400-52227800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:52220400-52228400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:52220400-52228400	Weak transcription	Fetal Kidney	kidney
39	chr10:52220400-52228800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:52220400-52228800	Weak transcription	Primary B cells from cord blood	blood
41	chr10:52220400-52229000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:52220400-52229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:52220400-52229000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:52220400-52229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:52220400-52229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:52220400-52229000	Weak transcription	Placenta	Placenta
47	chr10:52220400-52229200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:52220400-52229200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:52220400-52229200	Weak transcription	Fetal Lung	lung
50	chr10:52220400-52229600	Weak transcription	Fetal Thymus	thymus

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