Variant report

Variant	rs10764476
Chromosome Location	chr10:18707149-18707150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10764481	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10764487	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828650	0.80[ASN][1000 genomes]
rs10828677	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11815615	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11819196	0.81[EUR][1000 genomes]
rs1570940	0.82[EUR][1000 genomes]
rs61841962	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61841963	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61841999	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7079485	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71472842	0.85[ASN][1000 genomes]
rs7905106	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
7	chr10:18704800-18707200	Weak transcription	Fetal Heart	heart
8	chr10:18707000-18707200	Enhancers	Left Ventricle	heart
9	chr10:18707000-18707400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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