Variant report

Variant	rs11819196
Chromosome Location	chr10:18697657-18697658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10764476	0.81[EUR][1000 genomes]
rs10828650	0.85[CHD][hapmap]
rs10828677	0.85[EUR][1000 genomes]
rs11014101	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014102	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11815615	0.85[EUR][1000 genomes]
rs1570940	0.87[CEU][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs16917281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750592	0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs61841962	0.80[EUR][1000 genomes]
rs61841963	0.80[EUR][1000 genomes]
rs7079485	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7080623	0.82[ASN][1000 genomes]
rs7477742	0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11819196	SPAG6	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
4	chr10:18690200-18713000	Weak transcription	Ovary	ovary
5	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18691000-18698600	Weak transcription	Fetal Intestine Large	intestine
7	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
8	chr10:18692000-18702600	Weak transcription	Liver	Liver
9	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
13	chr10:18695400-18699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:18696400-18702800	Weak transcription	Right Ventricle	heart
15	chr10:18696800-18698200	Weak transcription	Fetal Heart	heart
16	chr10:18697400-18699000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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