Variant report

Variant	rs7477742
Chromosome Location	chr10:18695759-18695760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11014012	0.95[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs11014084	0.85[JPT][hapmap]
rs11014092	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014101	0.87[ASN][1000 genomes]
rs11014102	0.86[ASN][1000 genomes]
rs11014144	0.85[JPT][hapmap]
rs11014210	0.81[JPT][hapmap]
rs11014211	0.81[JPT][hapmap]
rs11819196	0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[ASN][1000 genomes]
rs16917281	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs17690664	0.85[JPT][hapmap]
rs3750592	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3829133	0.90[JPT][hapmap]
rs4293031	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7099509	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18695800	Weak transcription	Right Ventricle	heart
4	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
5	chr10:18690200-18713000	Weak transcription	Ovary	ovary
6	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18691000-18698600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
9	chr10:18692000-18702600	Weak transcription	Liver	Liver
10	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:18693400-18696800	Enhancers	Fetal Heart	heart
15	chr10:18695200-18696000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:18695400-18699400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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