Variant report

Variant	rs11014210
Chromosome Location	chr10:18722091-18722092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10508561	0.86[GIH][hapmap]
rs11014026	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs11014084	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014144	1.00[ASW][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.85[ASN][1000 genomes]
rs11014156	0.84[ASN][1000 genomes]
rs11014175	0.94[CEU][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014188	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014200	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014208	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014209	0.86[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11014211	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014216	0.91[EUR][1000 genomes]
rs12049663	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16917251	0.88[CEU][hapmap]
rs17690664	1.00[ASW][hapmap];0.94[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3750592	0.81[JPT][hapmap]
rs3829133	0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4145903	0.94[LWK][hapmap]
rs61839258	0.85[ASN][1000 genomes]
rs61841960	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61842000	0.84[ASN][1000 genomes]
rs6482438	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67214975	0.91[ASN][1000 genomes]
rs7096168	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72786093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477742	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11014210	CACNB2	cis	cerebellum	SCAN
rs11014210	MEIG1	cis	parietal	SCAN
rs11014210	SUV39H2	cis	parietal	SCAN
rs11014210	NSUN6	cis	cerebellum	SCAN
rs11014210	ARHGEF12	trans	cerebellum	SCAN
rs11014210	ACBD7	cis	parietal	SCAN
rs11014210	FAM107B	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
4	chr10:18721400-18723000	Enhancers	Fetal Heart	heart
5	chr10:18721800-18723800	Weak transcription	Left Ventricle	heart
6	chr10:18721800-18724000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links