Variant report

Variant	rs4145903
Chromosome Location	chr10:18718052-18718053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10828625	0.84[GIH][hapmap];0.90[JPT][hapmap]
rs11014175	0.84[CHB][hapmap]
rs11014200	0.85[AFR][1000 genomes]
rs11014208	0.82[AFR][1000 genomes]
rs11014210	0.94[LWK][hapmap]
rs11014211	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4145903	FAM188A	cis	cerebellum	SCAN
rs4145903	C10orf140	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18718200	Weak transcription	Right Ventricle	heart
3	chr10:18713400-18721400	Weak transcription	Left Ventricle	heart
4	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:18714600-18721000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18718000-18718400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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