Variant report

Variant	rs11014175
Chromosome Location	chr10:18712285-18712286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18706370..18708448-chr10:18711471..18713680,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508561	0.89[CHB][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap]
rs11014026	0.80[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014084	0.94[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014144	0.94[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014156	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014188	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014200	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014208	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014209	0.93[CEU][hapmap]
rs11014210	0.94[CEU][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014211	0.87[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014216	0.86[EUR][1000 genomes]
rs12049663	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12220716	0.89[CHB][hapmap]
rs16917251	0.81[CEU][hapmap];0.86[ASN][1000 genomes]
rs17690664	0.87[CEU][hapmap];0.84[CHB][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17692465	0.81[CHB][hapmap]
rs3829133	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4145903	0.84[CHB][hapmap]
rs61839230	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61839231	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61839258	0.85[ASN][1000 genomes]
rs61841960	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6482438	0.91[EUR][1000 genomes]
rs7077127	0.89[ASN][1000 genomes]
rs7096168	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72786093	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
4	chr10:18707800-18713000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:18707800-18713000	Weak transcription	Left Ventricle	heart
6	chr10:18708000-18713000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:18710800-18715200	Enhancers	Fetal Heart	heart
9	chr10:18711200-18713000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:18711400-18713400	Enhancers	Placenta	Placenta
11	chr10:18712200-18712600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18712200-18713200	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:18712200-18713400	Enhancers	Right Ventricle	heart
14	chr10:18712200-18713600	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links