Variant report

Variant	rs11014026
Chromosome Location	chr10:18683342-18683343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828625	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs11014012	0.81[JPT][hapmap]
rs11014084	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014144	1.00[JPT][hapmap]
rs11014175	0.80[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014188	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014209	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs11014210	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs11014211	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs16917251	0.91[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17690664	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs3829133	1.00[JPT][hapmap]
rs61839230	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839231	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839258	0.87[AMR][1000 genomes]
rs7096168	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
3	chr10:18679400-18689200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18680400-18683400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:18682600-18684200	Enhancers	Colon Smooth Muscle	Colon
6	chr10:18682800-18689000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18683200-18684000	Enhancers	Brain Anterior Caudate	brain
8	chr10:18683200-18684800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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