Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11014026	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014084	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014144	0.89[ASN][1000 genomes]
rs11014156	0.88[ASN][1000 genomes]
rs11014175	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014188	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014200	0.86[EUR][1000 genomes]
rs11014208	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014210	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014211	0.90[ASN][1000 genomes]
rs12049663	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16917251	0.83[AMR][1000 genomes]
rs17690664	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829133	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61839230	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61839231	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61839258	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61841960	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61842000	0.82[ASN][1000 genomes]
rs6482438	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67214975	0.81[ASN][1000 genomes]
rs72786093	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18695800	Weak transcription	Right Ventricle	heart
4	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
5	chr10:18690200-18713000	Weak transcription	Ovary	ovary
6	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18691000-18693800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:18691000-18698600	Weak transcription	Fetal Intestine Large	intestine
9	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
10	chr10:18691800-18695000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:18692000-18702600	Weak transcription	Liver	Liver
12	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:18692200-18694000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:18692800-18695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:18693000-18693400	Weak transcription	Fetal Heart	heart

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