Variant report

Variant	rs6482438
Chromosome Location	chr10:18726418-18726419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11014084	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014144	0.85[ASN][1000 genomes]
rs11014156	0.84[ASN][1000 genomes]
rs11014175	0.91[EUR][1000 genomes]
rs11014188	0.89[EUR][1000 genomes]
rs11014200	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11014208	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014210	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014211	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014216	0.89[EUR][1000 genomes]
rs12049663	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17690664	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3829133	0.88[ASN][1000 genomes]
rs61839258	0.85[ASN][1000 genomes]
rs61841960	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61842000	0.84[ASN][1000 genomes]
rs67214975	0.91[ASN][1000 genomes]
rs7096168	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72786093	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
4	chr10:18724200-18727200	Weak transcription	Left Ventricle	heart
5	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18726000-18730000	Enhancers	Fetal Heart	heart
7	chr10:18726400-18726600	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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