Variant report

Variant	rs11014156
Chromosome Location	chr10:18706480-18706481
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11014084	0.90[ASN][1000 genomes]
rs11014144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014175	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014188	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014208	0.84[ASN][1000 genomes]
rs11014210	0.84[ASN][1000 genomes]
rs11014211	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12049663	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690664	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3829133	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61839258	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61841960	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482438	0.84[ASN][1000 genomes]
rs7096168	0.88[ASN][1000 genomes]
rs72786093	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18703600-18707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:18703600-18707000	Weak transcription	Left Ventricle	heart
8	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
9	chr10:18704800-18707200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links