Variant report

Variant	rs61841960
Chromosome Location	chr10:18708563-18708564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11014084	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014144	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014156	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014175	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014188	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014200	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014208	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014210	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014211	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12049663	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690664	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3829133	0.90[ASN][1000 genomes]
rs61839258	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482438	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7096168	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786093	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
5	chr10:18707200-18708800	Enhancers	Fetal Heart	heart
6	chr10:18707400-18708600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:18707800-18713000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:18707800-18713000	Weak transcription	Left Ventricle	heart
9	chr10:18708000-18708600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:18708000-18713000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:18708200-18710400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:18708200-18712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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