Variant report

Variant	rs11014084
Chromosome Location	chr10:18692597-18692598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11014026	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014144	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11014156	0.90[ASN][1000 genomes]
rs11014175	0.94[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014188	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014200	0.86[EUR][1000 genomes]
rs11014208	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014209	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs11014210	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014211	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11014299	0.85[CHB][hapmap]
rs12049663	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16917251	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs17690664	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750592	0.85[JPT][hapmap]
rs3829133	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61839230	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61839231	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61839258	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61841960	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61842000	0.84[ASN][1000 genomes]
rs6482438	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67214975	0.80[ASN][1000 genomes]
rs7096168	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72786093	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7477742	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18689000-18692600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr10:18689200-18692800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
3	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
4	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
5	chr10:18690200-18695800	Weak transcription	Right Ventricle	heart
6	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
7	chr10:18690200-18713000	Weak transcription	Ovary	ovary
8	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18691000-18693800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:18691000-18698600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
12	chr10:18691800-18695000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:18692000-18692600	Active TSS	Brain Angular Gyrus	brain
14	chr10:18692000-18692800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:18692000-18702600	Weak transcription	Liver	Liver
16	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:18692200-18693000	Enhancers	Fetal Heart	heart
18	chr10:18692200-18694000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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