Variant report

Variant	rs61839230
Chromosome Location	chr10:18680837-18680838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10764459	0.85[ASN][1000 genomes]
rs11014026	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014084	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014175	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014188	0.85[ASN][1000 genomes]
rs16917251	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61839231	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61839258	0.89[AMR][1000 genomes]
rs7096168	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
4	chr10:18676400-18682600	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:18678200-18681000	Weak transcription	Fetal Heart	heart
6	chr10:18679400-18689200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:18680400-18683400	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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