Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10508561	0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10741073	0.80[JPT][hapmap]
rs10828704	0.83[JPT][hapmap]
rs10828726	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11014084	0.85[CHB][hapmap]
rs11014144	0.85[CHB][hapmap]
rs11014211	0.85[CHB][hapmap]
rs11014261	0.86[JPT][hapmap]
rs11014266	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014284	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014302	0.83[ASN][1000 genomes]
rs11014317	0.80[ASN][1000 genomes]
rs11014337	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12220716	0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17690664	0.80[CHB][hapmap]
rs17692465	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3829133	0.90[CHB][hapmap]
rs55761512	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61842001	0.84[ASN][1000 genomes]
rs7091297	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
3	chr10:18739000-18744000	Weak transcription	Ovary	ovary
4	chr10:18739000-18744800	Weak transcription	Right Ventricle	heart
5	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
6	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:18739800-18745400	Weak transcription	Left Ventricle	heart
8	chr10:18740600-18744200	Enhancers	Fetal Heart	heart
9	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
10	chr10:18742000-18745000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:18743000-18743800	Weak transcription	Placenta	Placenta
12	chr10:18743400-18745200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18743400-18746200	Enhancers	Dnd41	blood

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