Variant report

Variant	rs11014261
Chromosome Location	chr10:18735948-18735949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001486	0.85[CHB][hapmap]
rs10508561	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10741073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014256	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014266	0.89[ASN][1000 genomes]
rs11014284	0.84[ASN][1000 genomes]
rs11014299	0.86[JPT][hapmap]
rs11014302	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014317	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014337	0.83[ASN][1000 genomes]
rs12220716	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17692465	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs55761512	0.81[ASN][1000 genomes]
rs7090956	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7091297	0.86[ASN][1000 genomes]
rs7091299	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7099509	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:18730000-18738600	Weak transcription	Ovary	ovary
3	chr10:18730200-18738000	Weak transcription	Left Ventricle	heart
4	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
6	chr10:18733400-18736200	Enhancers	Fetal Heart	heart
7	chr10:18734200-18738800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:18735000-18736000	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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