Variant report

Variant	rs7091299
Chromosome Location	chr10:18733562-18733563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508561	0.87[ASN][1000 genomes]
rs10741073	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828704	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828726	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014256	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014261	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014266	0.87[ASN][1000 genomes]
rs11014284	0.83[ASN][1000 genomes]
rs11014302	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014317	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014337	0.81[ASN][1000 genomes]
rs12220716	0.87[ASN][1000 genomes]
rs17692465	0.81[ASN][1000 genomes]
rs7090956	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7091297	0.90[ASN][1000 genomes]
rs7099509	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:18728400-18734200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18730000-18738600	Weak transcription	Ovary	ovary
4	chr10:18730200-18738000	Weak transcription	Left Ventricle	heart
5	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:18732400-18735000	Weak transcription	Right Ventricle	heart
7	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
8	chr10:18733400-18736200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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