Variant report

Variant	rs17692465
Chromosome Location	chr10:18750788-18750789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10508561	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10741073	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10828704	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828726	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11014175	0.81[CHB][hapmap]
rs11014256	0.83[ASN][1000 genomes]
rs11014261	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014266	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11014284	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11014299	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014302	0.83[ASN][1000 genomes]
rs11014317	0.84[ASN][1000 genomes]
rs11014337	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220716	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55761512	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7091297	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7091299	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv12968	chr10:18747626-18761494	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760102	chr10:18749345-18762948	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
3	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
5	chr10:18744400-18761800	Weak transcription	Ovary	ovary
6	chr10:18745200-18750800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:18745400-18763200	Weak transcription	Right Ventricle	heart
8	chr10:18745800-18761600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:18746200-18752400	Weak transcription	Left Ventricle	heart
10	chr10:18749000-18759000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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