Variant report

Variant	rs10828677
Chromosome Location	chr10:18709808-18709809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10764476	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764481	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764487	0.84[ASN][1000 genomes]
rs11014101	0.82[EUR][1000 genomes]
rs11014102	0.82[EUR][1000 genomes]
rs11815615	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11819196	0.85[EUR][1000 genomes]
rs16917281	0.83[EUR][1000 genomes]
rs61841962	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61841963	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61841999	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7079485	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
5	chr10:18707800-18713000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:18707800-18713000	Weak transcription	Left Ventricle	heart
7	chr10:18708000-18713000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:18708200-18710400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:18708200-18712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18708800-18710800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links