Variant report

Variant	rs10765654
Chromosome Location	chr11:93833731-93833732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10765652	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765653	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831166	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1356565	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1401186	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2945637	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2945638	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2945639	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2945640	0.83[EUR][1000 genomes]
rs2945641	0.86[EUR][1000 genomes]
rs2949861	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2949862	0.81[EUR][1000 genomes]
rs4348853	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116300	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93832400-93833800	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr11:93832600-93833800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr11:93833000-93833800	ZNF genes & repeats	Fetal Intestine Large	intestine
4	chr11:93833200-93834600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93833200-93841000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:93833400-93834600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93833400-93834600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:93833400-93834600	Enhancers	HMEC	breast
9	chr11:93833400-93834800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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