Variant report

Variant	rs2945637
Chromosome Location	chr11:93809618-93809619
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10765652	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10765653	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10765654	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10831166	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1356565	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1401186	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2945638	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2945639	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2945640	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2945641	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2949861	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2949862	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4073612	0.81[GIH][hapmap]
rs4348853	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7116300	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2945637	PANX1	cis	cerebellum	SCAN
rs2945637	HEPHL1	cis	parietal	SCAN
rs2945637	GPR83	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93794800-93816400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93801800-93812800	Weak transcription	Aorta	Aorta
3	chr11:93802400-93833400	Weak transcription	HMEC	breast
4	chr11:93802600-93816600	Weak transcription	NHEK	skin
5	chr11:93807000-93810800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:93808600-93810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93808600-93810800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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