Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1569547	0.85[ASN][1000 genomes]
rs2016647	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2067084	0.91[CEU][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2866943	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3787279	0.80[ASN][1000 genomes]
rs45474194	0.80[ASN][1000 genomes]
rs55683344	0.80[ASN][1000 genomes]
rs6016688	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs6029982	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs6065432	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6072628	0.92[ASN][1000 genomes]
rs6102659	0.82[ASN][1000 genomes]
rs6102662	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6102677	0.92[ASN][1000 genomes]
rs6130026	0.82[ASN][1000 genomes]
rs6130031	0.85[ASN][1000 genomes]
rs67506870	0.80[ASN][1000 genomes]
rs722897	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs742293	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs877431	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40715800-40757600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40722800-40747200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:40723200-40741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:40731200-40742000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:40733800-40742600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr20:40737600-40747800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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