Variant report

Variant	rs3787279
Chromosome Location	chr20:40711386-40711387
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1076666	0.80[ASN][1000 genomes]
rs1569547	0.95[ASN][1000 genomes]
rs2016647	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2866943	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45474194	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683344	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6016688	0.84[ASN][1000 genomes]
rs6065432	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6065434	0.84[AFR][1000 genomes]
rs6072628	0.87[ASN][1000 genomes]
rs6102659	0.97[ASN][1000 genomes]
rs6102662	1.00[ASN][1000 genomes]
rs6102677	0.87[ASN][1000 genomes]
rs6130026	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6130031	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67506870	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs722897	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs742293	0.84[ASN][1000 genomes]
rs877431	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40701800-40715200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40703800-40713200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:40710000-40714400	Weak transcription	Fetal Brain Female	brain
4	chr20:40710400-40713000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr20:40710600-40714200	Enhancers	Fetal Stomach	stomach
6	chr20:40710800-40712000	Enhancers	Fetal Kidney	kidney
7	chr20:40710800-40712200	Enhancers	Fetal Lung	lung
8	chr20:40711000-40712200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr20:40711000-40712400	Enhancers	Fetal Muscle Leg	muscle
10	chr20:40711200-40712200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr20:40711200-40713600	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links